1. Shaw, J.; Garrison, S.A.; Alemán, E.A.; Ziegler, C.J.; Modarelli, D.A. “Photophysical Properties of para-substituted N-Confused Porphyrins” J. Org. Chem. 2004, 69, 7423-7427.

2. Wolff, S.A.; Banerjee, D.; Alemán, E.A.; Rinaldi, P., Modarelli, D.A. “One Step Synthesis and Characterization of Difunctionalized N-confused Porphyrins” J. Org. Chem. 2004, 69, 4571-4576.


3. Hu, J.; Zhang, D.; Cheng, S. Z. D.; Harris, F. W.; Aleman, E. A.; Modarelli, D. A. “Planar liquid-crystalline bisphenazines: Potential electron transport materials” Polymer Preprint 2005, 46, 967-968.

4. Ding, T.; Alemán, E. A.; Modarelli, D. A.; Ziegler, C. J. “Photophysical Properties of a Series of Free-Base Corroles” J. Phys. Chem. A 2005, 109, 7411-7417.


5. Anannarukan, W.; Tantayanon, S.; Zhang, D.; Alemán, E. A.; Modarelli, D. A.; Harris, F. W. “Soluble Polyimides Containing Trans-Diaminotetraphenylporphyrin: Synthesis and Photoinduced Electron Transfer” Polymer 2006, 47, 4936-4945.

6. Alemán, E. A.; Cheruvallil, R. S.; Ziegler, C. J.; Modarelli, D. A. “Ultrafast Spectroscopy of Free-Base N-Confused Tetraphenylporphyrins” J. Phys. Chem. A 2006, 110, 8605-8612.


7. Ditzler, M. A.; Alemán, E. A.; Rueda, D.; Walter, N. G. “Focus on Function: Single Molecule RNA Enzymology” Biopolymers 2007, 87, 302-316.


8. Alemán, E. A.; Lamichhane, R. and Rueda, D. “Exploring RNA Folding one Molecule at a Time” Curr. Opin. Chem. Bio. 2008, 12, 647-654.


9. Alemán, E.A.; Shreiner, C.D.; Rajesh, C.S.; Smith, T.; Garrison, S.A.; Modarelli, D.A. “Photoinduced Electron-Transfer within Osmium(II) and Ruthenium(II) bis-Terpyridine Donor Acceptor Dyads” Dalton Transactions 2009, 6562-6567.

10. Alemán, E. A.; Pedini, H.; Rueda, D. “Covalent-Bond-Based Immobilization Approaches for Single-Molecule Fluorescence” ChemBioChem 2009, 10, 2862-2866.


11. Zhou, L.; Soucek, M. D.; Heinz, H.; Alemán, E. A.; Modarelli, D. A. “UV-Absorption and Silica/Titania Colloids Using a Core Shell Approach” Silicon 2010, 2, 95-104.

12. Zhao, R.; Marshall, M.; Alemán, E. A.; Lamichhane, R.; Feig, A.; Rueda, D. “Laser Assisted Single Molecule Refolding (LASR)” Biophysical J. 2010 ,99, 1925-1931.


13. Alemán, E. A.; Manríquez-Rocha, J.; Wongwitwichote, W.; Godínez, L. A..; Modarelli, D. A. "Spectroscopy of Free-Base N-Confused Tetraphenylporphyrin Radical Anion and Radical Cation" J. Phys. Chem. A. 2011, 115, 6456-6471.


14. Alemán, E. A.; de Silva, C.; Patrick, E. M.; Musier-Forsyth; Rueda, D. “SingleMoleucle Fluorescence Using Nucleotides Analogs: A Proof-of-Principle” J. Phys. Chem. Lett. 2014, 5, 777-781.


15. Alemán, E. A.; Joseph, J.; Davis, M.; Modarelli, D. A. "Solvent Effects on the UV-Vis Absorption Properties and Tautomerism of N-Confused Tetraphenylporphyrin". J. Org. Chem. 2015, 80, 11031-11038.